SeqVISTA is a free software that presents a holistic, graphical view of features annotated on nucleotide or protein sequences.
SeqVISTA highlights the residues in the sequence that correspond to features chosen by the user, and allows easy searching for sequence motifs or extraction of particular subsequences.
SeqVISTA is able to display results from diverse sequence analysis tools in an integrated fashion, and aims to provide much-needed unity to the bioinformatics resources scattered around the Internet.
Our viewer may be launched on a GenBank record by a single click of a button installed in the web browser.
SeqVISTA allows insights to be gained by viewing the totality of sequence annotations and predictions, which may be more revealing than the sum of their parts.
Here are some key features of "SeqVISTA":
· SeqVISTA provides powerful visual data mining tools for bio-sequences (nucleotide/protein). SeqVISTA supports data loading from the GenBank database, either through URL copy/paste, or using gi/accession number.
· SeqVISTA also supports virtually unlimited data input from various computational programs, such as RepeatMasker, Michael Zhang Gene Finder, Cister, etc.
· SeqVISTA supports direct queries through web services using analysis plug-ins. Its open architecture enables integration with virtually unlimited sequence analysis resources.
· SeqVISTA supports comparison of multiple sequences, in either parallel or compositive modes.
· SeqVISTA provides powerful searching abilities using Regular Expressions. It also enables searching on both strands for nucleotide sequences.
· Supports image output with high resolution, please see a sample image with 300 DPI
Requirements:
· Java 1.4 or later
What`s New in This Release: [ read full changelog ]
· Fixed the installation problem in version 1.8.